Format: http://anonscm.debian.org/viewvc/dep/web/deps/dep5.mdwn?revision=174 Upstream-Name: RasMol Upstream-Contact: Herbert J. Bernstein Source: http://sourceforge.net/projects/openrasmol/ Files: * debian/rasmol_*.xpm debian/rasmol-classic.sh.debian Copyright: . RasMol 2.7.5.2 Molecular Graphics Visualisation Tool 3 June 2009 (rev. 13 May 2011) . Based on RasMol 2.6 by Roger Sayle Biomolecular Structures Group, Glaxo Wellcome Research & Development, Stevenage, Hertfordshire, UK Version 2.6, August 1995, Version 2.6.4, December 1998 Copyright (c) Roger Sayle 1992-1999 . and Based on Mods by . +-----------------------------------------------------------------------------+ | Author | Version, Date | Copyright | |-------------------+----------------------+----------------------------------| | Arne Mueller | RasMol 2.6x1 May | (c) Arne Mueller 1998 | | | 1998 | | |-------------------+----------------------+----------------------------------| | Gary Grossman and | RasMol 2.5-ucb | (c) UC Regents/ModularCHEM | | Marco Molinaro | November 1995 | Consortium 1995, 1996 | | | RasMol 2.6-ucb | | | | November 1996 | | |-------------------+----------------------+----------------------------------| | Philippe Valadon | RasTop 1.3 August | (c) Philippe Valadon 2000 | | | 2000 | | |-------------------+----------------------+----------------------------------| | Herbert J. | RasMol 2.7.0 March | (c) Herbert J. Bernstein | | Bernstein | 1999 | 1998-2009 | | | RasMol 2.7.1 June | | | | 1999 | | | | RasMol 2.7.1.1 | | | | January 2001 | | | | RasMol 2.7.2 August | | | | 2000 | | | | RasMol 2.7.2.1 April | | | | 2001 | | | | RasMol 2.7.2.1.1 | | | | January 2004 | | | | RasMol 2.7.3 | | | | February 2005 | | | | RasMol 2.7.3.1 Apr | | | | 06 | | | | RasMol 2.7.4 Nov 07 | | | | RasMol 2.7.4.1 Jan | | | | 08 | | | | RasMol 2.7.4.2 Mar | | | | 08 | | | | RasMol 2.7.5 June | | | | 2009 | | | | RasMol 2.7.5.1 July | | | | 2009 | | | | RasMol 2.7.5.2 May | | | | 2011 | | +-----------------------------------------------------------------------------+ . RasMol 2.7.5 incorporates changes by T. Ikonen, G. McQuillan, N. Darakev and L. Andrews (via the neartree package). Work on RasMol 2.7.5 supported in part by grant 1R15GM078077-01 from the National Institute of General Medical Sciences (NIGMS), U.S. National Institutes of Health and by grant ER63601-1021466-0009501 from the Office of Biological & Environmental Research (BER), Office of Science, U. S. Department of Energy. RasMol 2.7.4 incorporated changes by G. Todorov, Nan Jia, N. Darakev, P. Kamburov, G. McQuillan, and J. Jemilawon. Work on RasMol 2.7.4 supported in part by grant 1R15GM078077-01 from the NIGMS/NIH and grant ER63601-1021466-0009501 from BER/DOE. RasMol 2.7.3 incorporates changes by Clarice Chigbo, Ricky Chachra, and Mamoru Yamanishi. Work on RasMol 2.7.3 supported in part by grants DBI-0203064, DBI-0315281 and EF-0312612 from the U.S. National Science Foundation and grant DE-FG02-03ER63601 from BER/DOE. The content is solely the responsibility of the authors and does not necessarily represent the official views of the funding organizations. . The code for use of RasMol under GTK in RasMol 2.7.4.2 was written by Teemu Ikonen. and Incorporating Translations by . +-----------------------------------------------------------------------------+ | Author | Item | Language | |--------------------------------------+--------------------------+-----------| | Isabel Servan Martinez, | 2.6 Manual | Spanish | | Jose Miguel Fernandez Fernandez | | | |--------------------------------------+--------------------------+-----------| | Jose Miguel Fernandez Fernandez | 2.7.1 Manual | Spanish | |--------------------------------------+--------------------------+-----------| | Fernando Gabriel Ranea | 2.7.1 menus and messages | Spanish | |--------------------------------------+--------------------------+-----------| | Jean-Pierre Demailly | 2.7.1 menus and messages | French | |--------------------------------------+--------------------------+-----------| | Giuseppe Martini, Giovanni Paolella, | 2.7.1 menus and messages | Italian | | A. Davassi, M. Masullo, C. Liotto | 2.7.1 help file | | |--------------------------------------+--------------------------+-----------| | G. Pozhvanov | 2.7.3 menus and messages | Russian | |--------------------------------------+--------------------------+-----------| | G. Todorov | 2.7.3 menus and messages | Bulgarian | |--------------------------------------+--------------------------+-----------| | Nan Jia, G. Todorov | 2.7.3 menus and messages | Chinese | |--------------------------------------+--------------------------+-----------| | Mamoru Yamanishi, Katajima Hajime | 2.7.3 menus and messages | Japanese | +-----------------------------------------------------------------------------+ . This Release by Herbert J. Bernstein, Bernstein + Sons, 5 Brewster Lane, Bellport, NY, USA yaya@bernstein-plus-sons.com Copyright (c) Herbert J. Bernstein 1998-2009 . The original RasMol manual was created by Roger Sayle. In July 1996, Dr. Margaret Wong of the Chemistry Department, Swinburne University of Technology, Australia, made extensive revisions to the RasMol 2.5 manual to accurately reflect the operation of RasMol 2.6. Eric Martz of the University of Massachusetts made further revisions. In May 1997, William McClure of Carnegie Mellon University reorganized the HTML version of the manual into multiple sections which could be downloaded quickly and added use of frames. Portions of the 2.7.1 version of the RasMol manual were derived with permission from William McClure's version using Roger Sayle's rasmol.doc for version 2.6.4 as the primary source. Changes were made in August 2000 for RasMol version 2.7.2, January 2001 for RasMol version 2.7.1.1 and April 2001 for RasMol version 2.7.2.1 and February 2005 for RasMol version 2.7.3. . Documentation Last Updated 14 May 2011 Edited by Herbert J. Bernstein and Frances C. Bernstein . Translations . Thanks to the efforts of Jose Miguel Fernandez Fernandez (Departamento de Bioquimica y Biologia Molecular. Universidad de Granada. Espana (jmfernan@ugr.es)) a translation of the Manual for Rasmol version 2.7.1 into Spanish is now available. La traduccion espanola del manual de la version de la Dra. Wong revisada por Eric Martz fue realizada por Isabel Servan Martinez y Jose Miguel Fernandez Fernandez. La actual traduccion del Manual de RasMol 2.7.1 ha sido realizada usando como base la anterior de RasMol 2.6 por Jose Miguel Fernandez Fernandez. . Thanks to translations by Fernando Gabriel Ranea in late 2000 and early 2001, RasMol is now capable of rendering most menu items and messages in Spanish. Jean-Pierre Demailly provided French translations of menus and messages in January 2001. Giuseppe Martini and Giovanni Paolella with contributions by A. Davassi, M. Masullo and C. Liotto provided Italian translations of menus and messages in March 2001. License: GPL-2 Files: data/*.pdb* data/*.ent* data/*.CIF Copyright: Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all copyright restrictions and made fully and freely available for both non-commercial and commercial use. Users of the data should attribute the original authors of that structural data. By using the materials available in the PDB archive, the user agrees to abide by the conditions described in the PDB Advisory Notice. License: ADVISORY NOTICE FOR USE OF THE PDB ARCHIVE . By using the materials available in this archive, the user agrees to abide by the following conditions: . * The archival data files in the PDB archive are made freely available to all users. Data files within the archive may be redistributed in original form without restriction. Redistribution of modified data files using the same file name as is on the FTP server is prohibited. The rules for file names are detailed at http://www.wwpdb.org/wwpdb_charter.html. . * Data files containing PDB content may incorporate the PDB 4-letter entry name (e.g. 1ABC) in standard PDB records only if they are exactly the same as what is residing in the PDB archive. This does not prevent databases from including PDB entry_id's as cross-references where it is clear that they refer to the PDB archive. PDB records refer to the standard PDB format. The distribution of modified PDB data including the records HEADER, CAVEAT, REVDAT, SPRSDE, DBREF, SEQADV, and MODRES in PDB format and their mmCIF and XML equivalents is not allowed. . * The user assumes all responsibility for insuring that intellectual property claims associated with any data set deposited in the PDB archive are honored. It should be understood that the PDB data files do not contain any information on intellectual property claims with the exception in some cases of a reference for a patent involving the structure. . * Any opinion, findings, and conclusions expressed in the PDB archive by the authors/contributors do not necessarily reflect the views of the wwPDB. . * The data in the PDB archive are provided on an "as is" basis. The wwPDB nor its comprising institutions cannot be held liable to any party for direct, indirect, special, incidental, or consequential damages, including lost profits, arising from the use of PDB materials. . * Resources on this site are provided without warranty of any kind, either expressed or implied. This includes but is not limited to merchantability or fitness for a particular purpose. The institutions managing this site make no representation that these resources will not infringe any patent or other proprietary right. Files: debian/* Copyright: Teemu Ikonen License: GPL-2 License: GPL-2 This version is based directly on RasMol version 2.7.5.1, on RasMol version 2.7.4.2, on RasMol version 2.7.4.1, on RasMol version 2.7.4, on RasMol version 2.7.3.1, on RasMol version 2.7.3, on RasMol version 2.7.2.1.1, on RasMol version 2.7.2, on RasMol version 2.7.1, on RasMol version 2.6_CIF.2, on RasMol version 2.6x1, on RasMol version 2.6.4, and RasMol 2.5-ucb and 2.6-ucb. . RasMol versions 2.7.3 and higher may be distributed under the terms of the GNU General Public License (the GPL), see . http://www.gnu.org/licenses/gpl.txt . In Debian systems, the GNU General Public License version 2 can be found at /usr/share/common-licenses/GPL-2