X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat X-Debianized-By: Steffen Moeller X-Debianized-Date: Mon, 10 Sep 2007 23:15:37 +0200 X-Source-Downloaded-From: ftp://infernal.janelia.org/pub/software/infernal X-Upstream-Author: Infernal developer team at HHMI Janelia Farm: Diana Kolbe Eric Nawrocki Sean Eddy . The "rigfilters" code was contributed by Zasha Weinberg and Larry Ruzzo, University of Washington, Seattle. Files: debian/* Copyright: © 2007-2008 Steffen Moeller © 2007-2008 Charles Plessy © 2009 Andreas Tille License: Same as infernal Files: rigfilters/* Copyright: © 2004, Zasha Weinberg License: BSD family Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . - Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. - Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. - Neither the name of the University of Washington nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Files: easel/{esl_sse.c,esl_vmx.c} Copyright: © 2007 Julien Pommier © 1992 Stephen Moshier License: BSD Files: easel/easel.c::esl_tmpfile() Copyright: © 1999-2001 David A. Wheeler License: MIT Files: easel/esl_regexp.c Copyright: © 1986, 1993, 1995 by University of Toronto License: BSD Files: easel/* Copyright: © 2004-2008 Sean R. Eddy © 2006-2008 Howard Hughes Medical Institute License: Easel - a library of C functions for biological sequence analysis @EASEL_COPYRIGHT@ . The Easel library is freely modifiable and redistributable under the Janelia Farm Software License, a BSD license: . Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . 3. Neither the name of the Howard Hughes Medical Institute nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, ANY IMPLIED WARRANTIES OF MERCHANTABILITY, NON-INFRINGEMENT, OR FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; REASONABLE ROYALTIES; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Files: Userguide.pdf X-Comment: The PDFs that are coming with the sources from which the userguide is built are indeed upstream's original sources. They are edited with a PDF editor. Upstream, Dr Eddy, was consulted in this issue. Files: * Copyright: © 2001-2007 HHMI Janelia Farm © 1991-2007 Sean R. Eddy © 2005-2007 Eric P. Nawrocki © 2005-2007 Diana L. Kolbe © 2004 Zasha Weinberg © 1990 Don G. Gilbert © 1995-2006 Washington University in St. Louis © 1992-1995 Medical Research Council, UK © 2004 University of Washington, Seattle © 1986,1993,1995 University of Toronto © 1989-2001 Free Software Foundation © 1991 Massachusetts Institute of Technology License: GPL-3 This suite of programs is free software. You can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . In other words, you may modify, copy, or redistribute this source code and its documentation, but if you do, you must preserve all these copyrights and distribute all derivative versions as free software under the GNU General Public License. . This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this software, in the file LICENSE; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA or see http://www.gnu.org/ X-Comment: On Debian systems, the complete text of the GNU General Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'.